Data Science Specialist in proteomics - DTU Bioengineering

We are excited to welcome a Data Science Specialist to our growing DTU Proteomics Core Platform at DTU Bioengineering! In this impactful role, you will specialize in the analysis of proteomics data, applying your expertise in data science, cloud computing, machine learning, and bioinformatics to support cutting-edge research across the department and together with industry partners.

As a core member of our interdisciplinary team, you will work closely with the DTU Proteomics Core and be affiliated with the Data Science Hub, offering analytical support for both internal and external projects. The DTU Proteomics Core is a well-established facility, providing state-of-the-art mass spectrometry-based proteomics analysis for both academia and industry. Your primary mission will be to deliver tailored bioinformatics services, develop robust data analysis pipelines for proteomics, and deploy solutions to the cloud to enhance the research capabilities of the DTU Proteomics Core facility and the department. Additionally, you will lead educational initiatives, promoting bioinformatics and proteomics literacy to empower researchers across DTU Bioengineering.

This role is essential in linking diverse research groups, positioning you at the forefront of innovative proteomics and data science applications. You will act as a consultant to guide and shape the formulation of research questions and experimental design, applying a creative and out-of-the-box approach to solve complex scientific challenges. You will be engaged in a fast-paced, top-tier research environment that encourages innovative thinking and the pursuit of transformative solutions. 

Your contributions will drive meaningful research in biotechnology, systems biology, and related fields, working with a dedicated team of proteomics experts and data scientists to pioneer new discoveries and solutions. You will play a pivotal role in bridging diverse research groups, enabling interdisciplinary insights and fostering collaborations that amplify the impact of our research.

The job
We are seeking a dynamic and innovative Data Science Specialist with a strong background in bioinformatics and data science, and a keen interest in proteomics and cloud computing. You will play a crucial role in our team, working closely with researchers to analyze proteomics data, provide insightful solutions and deliver insights. You will be affiliated with a growing team of data scientists, engineers, and a data manager in our newly established Data Science Hub at the department. As part of the Data Science Hub, supporting researchers throughout the department.

Key Responsibilities:

• Devise and implement bioinformatics strategies for proteomics support, including the development of analysis pipelines and educational programs to boost department-wide bioinformatics and proteomics literacy
• Collaborate with scientists and industry to conceptualize and execute proteomics-focused projects, ensuring optimal data utilization and analysis
• Provide consultation on data generated from proteomics projects, aiding researchers in their pursuits or independently managing projects when necessary
• Assist with bioinformatics tool deployment and maintain the department’s growing cloud infrastructure
• Stay current with emerging technologies in data science, proteomics, and cloud development.

Skills and qualifications

• PhD or Master’s degree and equivalent experience in fields like data science, bioinformatics, systems biology, biotechnology, or related disciplines
• Strong experience with mass spectrometry and proteomics data analysis is preferred, including functional and gene enrichment analysis, handling PTMs and peptide-level data
• Proficiency in machine learning and dimensionality reduction techniques applicable to proteomics data
• Familiarity with systems biology tools and solid foundation in statistical approaches for biological data analysis
• Experience with workflow management systems like Snakemake or Nextflow for reproducible pipelines and experience or interest in cloud computing and tool deployment for bioinformatics solutions
• Proficiency in Python programming and experience with Git for version control and working knowledge of Unix/Linux operating systems
• Enthusiasm for multidisciplinary and collaborative research, good interpersonal skills and the ability to work effectively in an international team and manage multiple projects simultaneously.
• Proficiency in English, both oral and written, and excellent communication and presentation skills.

You are reliable, well-organized, and able to work independently. You demonstrate flexibility, accuracy, and an out-of-the-box thinking approach. If you are highly motivated and ambitious, we strongly encourage you to apply. This position offers an exciting opportunity to contribute to our mission and make a significant impact in the field. If you are passionate about data science and eager to learn and work in cloud environments, we would love to hear from you.

What we offer in return
We offer an interesting and challenging job in an international atmosphere with the focus on research, teaching, innovation, and scientific advice for the benefit of the surrounding community. We place emphasis on a high level of professionalism among our staff, so skills development is an integral part of our organization. We offer great flexibility in the position. In the area of technical and natural sciences, DTU is one of the leading research and education institutions in Europe.

Salary and appointment terms
The appointment will be based on the collective agreement with the Danish Confederation of Professional Associations. The allowance will be agreed upon with the relevant union.

Application and contact
Please submit your online application no later than 7 February 2025 . Applications will be considered on an ongoing basis. Open the “Apply now” link, fill out the form and attach your motivated application, CV, and exam certificates.

If you would like additional information about the position, please contact Proteomics Core Facility Manager  Marie Vestergaard Lukassen at [email protected] . 

Applications received after the deadline will not be considered.

All interested candidates irrespective of age, gender, race, disability, religion, or ethnic background are encouraged to apply.

The Department of Biotechnology and Biomedicine (DTU Bioengineering)  is an international leader in the areas of biotechnology and biomedicine. Our engineering approach to all aspects of biotechnology and biomedicine positions us as a valuable player with unique competences in a growing bio-based economy and with health systems transforming towards personalized medicine. We have a clear focus on the needs in the life science- and biotech industries and point towards innovation, new businesses, and scientific services for the benefit of society. The department has extensive collaborations with national and international research units and industry. DTU Bioengineering has approx. 400 employees, of which 2/3 are scientific staff. The department is located at DTU Lyngby Campus.

Technology for people
DTU develops technology for people. With our international elite research and study programmes, we are helping to create a better world and to solve the global challenges formulated in the UN’s 17 Sustainable Development Goals. Hans Christian Ørsted founded DTU in 1829 with a clear mission to develop and create value using science and engineering to benefit society. That mission lives on today. DTU has 13,500 students and 6,000 employees. We work in an international atmosphere and have an inclusive, evolving, and informal working environment. DTU has campuses in all parts of Denmark and in Greenland, and we collaborate with the best universities around the world.